PythonPDB
Tools for working with Protein Data Bank Files. This package was created to provide a bridge between python based OOP (like BioPython) and dataframe/pandas style interfaces (like BioPandas).
Key Links
Source code: https://github.com/benjiemc/PythonPDB
Documentation: https://benjiemc.github.io/PythonPDB/
Installation
The package is available on PyPi and can be downloaded as follows.
pip install python-pdb
Installing for Development
To work on this package, download the git repository…
git clone https://github.com/benjiemc/PythonPDB.git
# or using SSH
git clone git@github.com:benjiemc/PythonPDB.git
cd PythonPDB/
… and then install the package with development dependencies (best practice is to use a virtual environment).
python3 -m venv venv
pip install -e '.[develop]'
Documentation
Documentation can be found at https://benjiemc.github.io/PythonPDB/.
Python API