Command Line Applications
=========================

.. toctree::
   :maxdepth: 1

   tcr_pmhc_interface_analysis.apps.align_tcr_pmhcs
   tcr_pmhc_interface_analysis.apps.cluster_cdr_loop_structures
   tcr_pmhc_interface_analysis.apps.colour_tcr_on_mhc
   tcr_pmhc_interface_analysis.apps.compute_apo_holo_differences
   tcr_pmhc_interface_analysis.apps.compute_pw_distances
   tcr_pmhc_interface_analysis.apps.download_stcrdab
   tcr_pmhc_interface_analysis.apps.renumber_structure
   tcr_pmhc_interface_analysis.apps.sample_ots
   tcr_pmhc_interface_analysis.apps.select_structures