Analysis Notebooks
==================

.. toctree::
   :maxdepth: 1

   Ascertaining_the_generalisability_of_the_structure_data
   Centre_of_mass_analysis
   Compare_d_scores
   Comparing_apo_and_holo_CDR_loop_clustering
   Comparison_of_apo_and_holo_CDR_loops
   Correlating_conformational_changes_to_affinit
   Identify_contact_residues_on_MHC_Class_I_molecules
   Length_dependency_of_conformational_change
   Modalities_of_TCR_interactions_with_pMHC
   Per_residue_changes_of_TCR_CDR_between_apo_and_holo_structures
   Summary_of_apo_holo_data
   Visualising_CDR_loop_clustering
   pMHC_movement_based_on_peptide_anchoring
   pMHC_movement_between_apo_and_holo_conformations