tcr_pmhc_interface_analysis.apps.sample_ots =========================================== .. code-block:: text usage: python -m tcr_pmhc_interface_analysis.apps.sample_ots [-h] [--sample-size SAMPLE_SIZE] [--num NUM] [--seed SEED] [--redundant] [--columns COLUMNS [COLUMNS ...]] --output OUTPUT [--log-level {debug,info,warning,error}] path Sample OTS sequences and select columns. positional arguments: path path to OTS files options: -h, --help show this help message and exit --sample-size SAMPLE_SIZE size of samples (Default: 1000) --num NUM, -n NUM number of samples to take (Default: 1) --seed SEED Seed for sampling (Default: None) --redundant do not remove redundant TCRs based on input columns --columns COLUMNS [COLUMNS ...] relevant columns to include (Default: cdr1_aa_alpha, cdr2_aa_alpha, cdr3_aa_alpha, cdr1_aa_beta, cdr2_aa_beta, cdr3_aa_beta, v_call_alpha, v_call_beta, j_call_alpha, j_call_beta) --output OUTPUT, -o OUTPUT path to output csv Logging: Options for logging --log-level {debug,info,warning,error} Level to log messages at (Default: 'warning')