tcr_pmhc_interface_analysis.apps.select_structures
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.. code-block:: text

   usage: python -m tcr_pmhc_interface_analysis.apps.select_structures
          [-h] [--resolution-cutoff RESOLUTION_CUTOFF] [--add-mhcs]
          [--drop-duplicate-ids] [--output OUTPUT]
          [--log-level {debug,info,warning,error}]
          stcrdab
   
   Select apo and holo structures from the STCRDab and Histo.fyi.
   
   positional arguments:
     stcrdab               Path to STCRDab
   
   options:
     -h, --help            show this help message and exit
     --resolution-cutoff RESOLUTION_CUTOFF
                           Maximum resolution allowed from the structures
                           (Default: 3.50)
     --add-mhcs            Add MHC apo forms to all holo structures
     --drop-duplicate-ids  Only keep one copy of the structure from a pdb id
     --output OUTPUT, -o OUTPUT
                           Path to output location
   
   Logging:
     Options for logging
   
     --log-level {debug,info,warning,error}
                           Level to log messages at (Default: 'warning')