tcr_pmhc_interface_analysis package

Submodules

• tcr_pmhc_interface_analysis.align module
  • align_tcrs()
• tcr_pmhc_interface_analysis.chi_atoms module
• tcr_pmhc_interface_analysis.histo_fyi_utils module
  • fetch_structure()
  • retrieve_data_from_api()
• tcr_pmhc_interface_analysis.imgt_numbering module
  • IMGT_CDR
  • IMGT_CDR1
  • IMGT_CDR2
  • IMGT_CDR3
  • IMGT_MHC_ABD
  • IMGT_VARIABLE_DOMAIN
  • assign_cdr_number()
• tcr_pmhc_interface_analysis.measurements module
  • calculate_angle()
  • calculate_dihedral_angle()
  • calculate_phi_psi_angles()
  • compute_residue_com()
  • get_distance()
  • get_distances()
  • measure_chi_angle()
• tcr_pmhc_interface_analysis.missing_residues module
  • add_missing_entities_to_structure()
  • get_missing_atoms()
  • get_missing_residues()
  • get_missing_residues_and_atoms()
  • get_raw_structures_with_missing_residues()
  • screen_pmhcs_for_missing_residues()
  • screen_tcrs_for_missing_residues()
  • screen_variable()
• tcr_pmhc_interface_analysis.processing module
  • annotate_tcr_pmhc_df()
  • find_anchors()
• tcr_pmhc_interface_analysis.stcrdab_utils module
  • get_ab_tcr_mhc_class_Is_from_stcrdab()
  • get_ab_tcrs_from_stcrdab()
  • get_stcrdab_sequences()
• tcr_pmhc_interface_analysis.utils module
  • get_coords()
  • get_header()
  • get_sequence()
  • mhc_code_to_slug()
  • mhc_slug_to_code()

Module contents