tcr_pmhc_interface_analysis

• tcr_pmhc_interface_analysis package
  • Submodules
    • tcr_pmhc_interface_analysis.align module
      • align_tcrs()
    • tcr_pmhc_interface_analysis.chi_atoms module
    • tcr_pmhc_interface_analysis.histo_fyi_utils module
      • fetch_structure()
      • retrieve_data_from_api()
    • tcr_pmhc_interface_analysis.imgt_numbering module
      • IMGT_CDR
      • IMGT_CDR1
      • IMGT_CDR2
      • IMGT_CDR3
      • IMGT_MHC_ABD
      • IMGT_VARIABLE_DOMAIN
      • assign_cdr_number()
    • tcr_pmhc_interface_analysis.measurements module
      • calculate_angle()
      • calculate_dihedral_angle()
      • calculate_phi_psi_angles()
      • compute_residue_com()
      • get_distance()
      • get_distances()
      • measure_chi_angle()
    • tcr_pmhc_interface_analysis.missing_residues module
      • add_missing_entities_to_structure()
      • get_missing_atoms()
      • get_missing_residues()
      • get_missing_residues_and_atoms()
      • get_raw_structures_with_missing_residues()
      • screen_pmhcs_for_missing_residues()
      • screen_tcrs_for_missing_residues()
      • screen_variable()
    • tcr_pmhc_interface_analysis.processing module
      • annotate_tcr_pmhc_df()
      • find_anchors()
    • tcr_pmhc_interface_analysis.stcrdab_utils module
      • get_ab_tcr_mhc_class_Is_from_stcrdab()
      • get_ab_tcrs_from_stcrdab()
      • get_stcrdab_sequences()
    • tcr_pmhc_interface_analysis.utils module
      • get_coords()
      • get_header()
      • get_sequence()
      • mhc_code_to_slug()
      • mhc_slug_to_code()
  • Module contents