tcr_pmhc_interface_analysis.apps.select_structures

usage: python -m tcr_pmhc_interface_analysis.apps.select_structures
       [-h] [--resolution-cutoff RESOLUTION_CUTOFF] [--add-mhcs]
       [--drop-duplicate-ids] [--output OUTPUT]
       [--log-level {debug,info,warning,error}]
       stcrdab

Select apo and holo structures from the STCRDab and Histo.fyi.

positional arguments:
  stcrdab               Path to STCRDab

options:
  -h, --help            show this help message and exit
  --resolution-cutoff RESOLUTION_CUTOFF
                        Maximum resolution allowed from the structures
                        (Default: 3.50)
  --add-mhcs            Add MHC apo forms to all holo structures
  --drop-duplicate-ids  Only keep one copy of the structure from a pdb id
  --output OUTPUT, -o OUTPUT
                        Path to output location

Logging:
  Options for logging

  --log-level {debug,info,warning,error}
                        Level to log messages at (Default: 'warning')