usage: python -m tcr_pmhc_interface_analysis.apps.select_structures
[-h] [--resolution-cutoff RESOLUTION_CUTOFF] [--add-mhcs]
[--drop-duplicate-ids] [--output OUTPUT]
[--log-level {debug,info,warning,error}]
stcrdab
Select apo and holo structures from the STCRDab and Histo.fyi.
positional arguments:
stcrdab Path to STCRDab
options:
-h, --help show this help message and exit
--resolution-cutoff RESOLUTION_CUTOFF
Maximum resolution allowed from the structures
(Default: 3.50)
--add-mhcs Add MHC apo forms to all holo structures
--drop-duplicate-ids Only keep one copy of the structure from a pdb id
--output OUTPUT, -o OUTPUT
Path to output location
Logging:
Options for logging
--log-level {debug,info,warning,error}
Level to log messages at (Default: 'warning')