usage: python -m tcr_pmhc_interface_analysis.apps.align_tcr_pmhcs
[-h] [--output OUTPUT] [--only-holo]
[--log-level {debug,info,warning,error}]
structures
Align TCR, pMHC, and TCR:pMHC on the TCR framework region or the floor of the MHC antigen binding groove.
Requirements:
- PyMOL: https://www.pymol.org/
positional arguments:
structures path to the structures to align
options:
-h, --help show this help message and exit
--output OUTPUT, -o OUTPUT
path to output the aligned files
--only-holo only align the holo structures based on either TCR CDR
sequences or mhc allele and peptide sequence.
Logging:
Options for logging
--log-level {debug,info,warning,error}
Level to log messages at (Default: 'warning')