tcr_pmhc_interface_analysis.apps.compute_pw_distances

usage: python -m tcr_pmhc_interface_analysis.apps.compute_pw_distances
       [-h] [--output OUTPUT] [--resolution-cutoff RESOLUTION_CUTOFF]
       [--number-of-anchors NUMBER_OF_ANCHORS] [--compress-output]
       [--log-level {debug,info,warning,error}]
       stcrdab

Compute the pairwise DTW distance between all loops in the STCRDab.

positional arguments:
  stcrdab               Path to STCRDab

options:
  -h, --help            show this help message and exit
  --output OUTPUT, -o OUTPUT
                        Path to output location
  --resolution-cutoff RESOLUTION_CUTOFF
                        Maximum resolution allowed from the structures
                        (Default: 3.50)
  --number-of-anchors NUMBER_OF_ANCHORS
                        number of anchors to include in alignment (Default: 5)
  --compress-output     compress the output matrices using gzip

Logging:
  Options for logging

  --log-level {debug,info,warning,error}
                        Level to log messages at (Default: 'warning')