usage: python -m tcr_pmhc_interface_analysis.apps.compute_pw_distances
[-h] [--output OUTPUT] [--resolution-cutoff RESOLUTION_CUTOFF]
[--number-of-anchors NUMBER_OF_ANCHORS] [--compress-output]
[--log-level {debug,info,warning,error}]
stcrdab
Compute the pairwise DTW distance between all loops in the STCRDab.
positional arguments:
stcrdab Path to STCRDab
options:
-h, --help show this help message and exit
--output OUTPUT, -o OUTPUT
Path to output location
--resolution-cutoff RESOLUTION_CUTOFF
Maximum resolution allowed from the structures
(Default: 3.50)
--number-of-anchors NUMBER_OF_ANCHORS
number of anchors to include in alignment (Default: 5)
--compress-output compress the output matrices using gzip
Logging:
Options for logging
--log-level {debug,info,warning,error}
Level to log messages at (Default: 'warning')