tcr_pmhc_interface_analysis.utils module

tcr_pmhc_interface_analysis.utils.get_header(pdb_contents: str) → str: Get the header lines from the contents of a pdb file.

tcr_pmhc_interface_analysis.utils.get_sequence(df: DataFrame) → str: Get sequence from structre dataframe.

tcr_pmhc_interface_analysis.utils.mhc_code_to_slug(code: str) → str

Convert MHC allele codes into slugs.

>>> mhc_code_to_slug('HLA-A*02:01:59')
'hla_a_02_01_59'

tcr_pmhc_interface_analysis.utils.mhc_slug_to_code(slug: str) → str

Convert mhc slugs into the allele codes.

>>> mhc_slug_to_code('hla_a_02_01')
'HLA-A*02:01'

>>> mhc_slug_to_code('h2_kb')
'H2-Kb'

TODO: Make this better for other mouse alleles