tcr_pmhc_interface_analysis.imgt_numbering module

Constants and functions for annotating sequences as CDR domains in T cell receptors.

tcr_pmhc_interface_analysis.imgt_numbering.IMGT_CDR = {27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117}

IMGT residue numbers corresponding to all CDR domains.

tcr_pmhc_interface_analysis.imgt_numbering.IMGT_CDR1 = {27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38}

IMGT residue numbers corresponding to CDR 1 domains.

tcr_pmhc_interface_analysis.imgt_numbering.IMGT_CDR2 = {56, 57, 58, 59, 60, 61, 62, 63, 64, 65}

IMGT residue numbers corresponding to CDR 2 domains.

tcr_pmhc_interface_analysis.imgt_numbering.IMGT_CDR3 = {105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117}

IMGT residue numbers corresponding to CDR 3 domains.

tcr_pmhc_interface_analysis.imgt_numbering.IMGT_MHC_ABD = {1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 1001, 1002, 1003, 1004, 1005, 1006, 1007, 1008, 1009, 1010, 1011, 1012, 1013, 1014, 1015, 1016, 1017, 1018, 1019, 1020, 1021, 1022, 1023, 1024, 1025, 1026, 1027, 1028, 1029, 1030, 1031, 1032, 1033, 1034, 1035, 1036, 1037, 1038, 1039, 1040, 1041, 1042, 1043, 1044, 1045, 1046, 1047, 1048, 1049, 1050, 1051, 1052, 1053, 1054, 1055, 1056, 1057, 1058, 1059, 1060, 1061, 1062, 1063, 1064, 1065, 1066, 1067, 1068, 1069, 1070, 1071, 1072, 1073, 1074, 1075, 1076, 1077, 1078, 1079, 1080, 1081, 1082, 1083, 1084, 1085, 1086, 1087, 1088, 1089, 1090, 1091}

IMGT ranges of the antigen binding domain of MHC molecules.

tcr_pmhc_interface_analysis.imgt_numbering.IMGT_VARIABLE_DOMAIN = {1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128}

Variable domain range for IMGT numbered TCR structures.

tcr_pmhc_interface_analysis.imgt_numbering.assign_cdr_number(imgt_id: str | int | None) → int | None

Map imgt_id to CDR domains, return number associated with domain or return None if input is not in a CDR domain.