Index

A

add_missing_entities_to_structure() (in module tcr_pmhc_interface_analysis.missing_residues) align_tcrs() (in module tcr_pmhc_interface_analysis.align)

annotate_tcr_pmhc_df() (in module tcr_pmhc_interface_analysis.processing) assign_cdr_number() (in module tcr_pmhc_interface_analysis.imgt_numbering)

C

compute_residue_com() (in module tcr_pmhc_interface_analysis.measurements)

F

fetch_structure() (in module tcr_pmhc_interface_analysis.histo_fyi_utils)

find_anchors() (in module tcr_pmhc_interface_analysis.processing)

G

get_ab_tcr_mhc_class_Is_from_stcrdab() (in module tcr_pmhc_interface_analysis.stcrdab_utils) get_ab_tcrs_from_stcrdab() (in module tcr_pmhc_interface_analysis.stcrdab_utils) get_coords() (in module tcr_pmhc_interface_analysis.utils) get_distance() (in module tcr_pmhc_interface_analysis.measurements) get_distances() (in module tcr_pmhc_interface_analysis.measurements) get_header() (in module tcr_pmhc_interface_analysis.utils)

get_missing_atoms() (in module tcr_pmhc_interface_analysis.missing_residues) get_missing_residues() (in module tcr_pmhc_interface_analysis.missing_residues) get_missing_residues_and_atoms() (in module tcr_pmhc_interface_analysis.missing_residues) get_raw_structures_with_missing_residues() (in module tcr_pmhc_interface_analysis.missing_residues) get_sequence() (in module tcr_pmhc_interface_analysis.utils) get_stcrdab_sequences() (in module tcr_pmhc_interface_analysis.stcrdab_utils)

I

IMGT_CDR (in module tcr_pmhc_interface_analysis.imgt_numbering) IMGT_CDR1 (in module tcr_pmhc_interface_analysis.imgt_numbering) IMGT_CDR2 (in module tcr_pmhc_interface_analysis.imgt_numbering)

IMGT_CDR3 (in module tcr_pmhc_interface_analysis.imgt_numbering) IMGT_MHC_ABD (in module tcr_pmhc_interface_analysis.imgt_numbering) IMGT_VARIABLE_DOMAIN (in module tcr_pmhc_interface_analysis.imgt_numbering)

M

measure_chi_angle() (in module tcr_pmhc_interface_analysis.measurements) mhc_code_to_slug() (in module tcr_pmhc_interface_analysis.utils) mhc_slug_to_code() (in module tcr_pmhc_interface_analysis.utils) module tcr_pmhc_interface_analysis tcr_pmhc_interface_analysis.align tcr_pmhc_interface_analysis.chi_atoms tcr_pmhc_interface_analysis.histo_fyi_utils tcr_pmhc_interface_analysis.imgt_numbering tcr_pmhc_interface_analysis.measurements tcr_pmhc_interface_analysis.missing_residues tcr_pmhc_interface_analysis.processing tcr_pmhc_interface_analysis.stcrdab_utils tcr_pmhc_interface_analysis.utils

R

retrieve_data_from_api() (in module tcr_pmhc_interface_analysis.histo_fyi_utils)

S

screen_pmhcs_for_missing_residues() (in module tcr_pmhc_interface_analysis.missing_residues)

screen_tcrs_for_missing_residues() (in module tcr_pmhc_interface_analysis.missing_residues) screen_variable() (in module tcr_pmhc_interface_analysis.missing_residues)

T

tcr_pmhc_interface_analysis module tcr_pmhc_interface_analysis.align module tcr_pmhc_interface_analysis.chi_atoms module tcr_pmhc_interface_analysis.histo_fyi_utils module tcr_pmhc_interface_analysis.imgt_numbering module

tcr_pmhc_interface_analysis.measurements module tcr_pmhc_interface_analysis.missing_residues module tcr_pmhc_interface_analysis.processing module tcr_pmhc_interface_analysis.stcrdab_utils module tcr_pmhc_interface_analysis.utils module